// Copyright ©2015 The gonum Authors. All rights reserved. // Use of this source code is governed by a BSD-style // license that can be found in the LICENSE file. package testlapack import ( "fmt" "math" "testing" "github.com/gonum/blas" "github.com/gonum/blas/blas64" "github.com/gonum/lapack" ) func max(a, b int) int { if a > b { return a } return b } func min(a, b int) int { if a < b { return a } return b } // nanSlice allocates a new slice of length n filled with NaN. func nanSlice(n int) []float64 { s := make([]float64, n) for i := range s { s[i] = math.NaN() } return s } // extractVMat collects the single reflectors from a into a matrix. func extractVMat(m, n int, a []float64, lda int, direct lapack.Direct, store lapack.StoreV) blas64.General { k := min(m, n) switch { default: panic("not implemented") case direct == lapack.Forward && store == lapack.ColumnWise: v := blas64.General{ Rows: m, Cols: k, Stride: k, Data: make([]float64, m*k), } for i := 0; i < k; i++ { for j := 0; j < i; j++ { v.Data[j*v.Stride+i] = 0 } v.Data[i*v.Stride+i] = 1 for j := i + 1; j < m; j++ { v.Data[j*v.Stride+i] = a[j*lda+i] } } return v case direct == lapack.Forward && store == lapack.RowWise: v := blas64.General{ Rows: k, Cols: n, Stride: n, Data: make([]float64, k*n), } for i := 0; i < k; i++ { for j := 0; j < i; j++ { v.Data[i*v.Stride+j] = 0 } v.Data[i*v.Stride+i] = 1 for j := i + 1; j < n; j++ { v.Data[i*v.Stride+j] = a[i*lda+j] } } return v } } // constructVMat transforms the v matrix based on the storage. func constructVMat(vMat blas64.General, store lapack.StoreV, direct lapack.Direct) blas64.General { m := vMat.Rows k := vMat.Cols switch { default: panic("not implemented") case store == lapack.ColumnWise && direct == lapack.Forward: ldv := k v := make([]float64, m*k) for i := 0; i < m; i++ { for j := 0; j < k; j++ { if j > i { v[i*ldv+j] = 0 } else if j == i { v[i*ldv+i] = 1 } else { v[i*ldv+j] = vMat.Data[i*vMat.Stride+j] } } } return blas64.General{ Rows: m, Cols: k, Stride: k, Data: v, } case store == lapack.RowWise && direct == lapack.Forward: ldv := m v := make([]float64, m*k) for i := 0; i < m; i++ { for j := 0; j < k; j++ { if j > i { v[j*ldv+i] = 0 } else if j == i { v[j*ldv+i] = 1 } else { v[j*ldv+i] = vMat.Data[i*vMat.Stride+j] } } } return blas64.General{ Rows: k, Cols: m, Stride: m, Data: v, } case store == lapack.ColumnWise && direct == lapack.Backward: rowsv := m ldv := k v := make([]float64, m*k) for i := 0; i < m; i++ { for j := 0; j < k; j++ { vrow := rowsv - i - 1 vcol := k - j - 1 if j > i { v[vrow*ldv+vcol] = 0 } else if j == i { v[vrow*ldv+vcol] = 1 } else { v[vrow*ldv+vcol] = vMat.Data[i*vMat.Stride+j] } } } return blas64.General{ Rows: rowsv, Cols: ldv, Stride: ldv, Data: v, } case store == lapack.RowWise && direct == lapack.Backward: rowsv := k ldv := m v := make([]float64, m*k) for i := 0; i < m; i++ { for j := 0; j < k; j++ { vcol := ldv - i - 1 vrow := k - j - 1 if j > i { v[vrow*ldv+vcol] = 0 } else if j == i { v[vrow*ldv+vcol] = 1 } else { v[vrow*ldv+vcol] = vMat.Data[i*vMat.Stride+j] } } } return blas64.General{ Rows: rowsv, Cols: ldv, Stride: ldv, Data: v, } } } func constructH(tau []float64, v blas64.General, store lapack.StoreV, direct lapack.Direct) blas64.General { m := v.Rows k := v.Cols if store == lapack.RowWise { m, k = k, m } h := blas64.General{ Rows: m, Cols: m, Stride: m, Data: make([]float64, m*m), } for i := 0; i < m; i++ { h.Data[i*m+i] = 1 } for i := 0; i < k; i++ { vecData := make([]float64, m) if store == lapack.ColumnWise { for j := 0; j < m; j++ { vecData[j] = v.Data[j*v.Cols+i] } } else { for j := 0; j < m; j++ { vecData[j] = v.Data[i*v.Cols+j] } } vec := blas64.Vector{ Inc: 1, Data: vecData, } hi := blas64.General{ Rows: m, Cols: m, Stride: m, Data: make([]float64, m*m), } for i := 0; i < m; i++ { hi.Data[i*m+i] = 1 } // hi = I - tau * v * v^T blas64.Ger(-tau[i], vec, vec, hi) hcopy := blas64.General{ Rows: m, Cols: m, Stride: m, Data: make([]float64, m*m), } copy(hcopy.Data, h.Data) if direct == lapack.Forward { // H = H * H_I in forward mode blas64.Gemm(blas.NoTrans, blas.NoTrans, 1, hcopy, hi, 0, h) } else { // H = H_I * H in backward mode blas64.Gemm(blas.NoTrans, blas.NoTrans, 1, hi, hcopy, 0, h) } } return h } // constructQ constructs the Q matrix from the result of dgeqrf and dgeqr2. func constructQ(kind string, m, n int, a []float64, lda int, tau []float64) blas64.General { k := min(m, n) return constructQK(kind, m, n, k, a, lda, tau) } // constructQK constructs the Q matrix from the result of dgeqrf and dgeqr2 using // the first k reflectors. func constructQK(kind string, m, n, k int, a []float64, lda int, tau []float64) blas64.General { var sz int switch kind { case "QR": sz = m case "LQ": sz = n } q := blas64.General{ Rows: sz, Cols: sz, Stride: sz, Data: make([]float64, sz*sz), } for i := 0; i < sz; i++ { q.Data[i*sz+i] = 1 } qCopy := blas64.General{ Rows: q.Rows, Cols: q.Cols, Stride: q.Stride, Data: make([]float64, len(q.Data)), } for i := 0; i < k; i++ { h := blas64.General{ Rows: sz, Cols: sz, Stride: sz, Data: make([]float64, sz*sz), } for j := 0; j < sz; j++ { h.Data[j*sz+j] = 1 } vVec := blas64.Vector{ Inc: 1, Data: make([]float64, sz), } for j := 0; j < i; j++ { vVec.Data[j] = 0 } vVec.Data[i] = 1 switch kind { case "QR": for j := i + 1; j < sz; j++ { vVec.Data[j] = a[lda*j+i] } case "LQ": for j := i + 1; j < sz; j++ { vVec.Data[j] = a[i*lda+j] } } blas64.Ger(-tau[i], vVec, vVec, h) copy(qCopy.Data, q.Data) // Mulitply q by the new h switch kind { case "QR": blas64.Gemm(blas.NoTrans, blas.NoTrans, 1, qCopy, h, 0, q) case "LQ": blas64.Gemm(blas.NoTrans, blas.NoTrans, 1, h, qCopy, 0, q) } } return q } // checkBidiagonal checks the bidiagonal decomposition from dlabrd and dgebd2. // The input to this function is the answer returned from the routines, stored // in a, d, e, tauP, and tauQ. The data of original A matrix (before // decomposition) is input in aCopy. // // checkBidiagonal constructs the V and U matrices, and from them constructs Q // and P. Using these constructions, it checks that Q^T * A * P and checks that // the result is bidiagonal. func checkBidiagonal(t *testing.T, m, n, nb int, a []float64, lda int, d, e, tauP, tauQ, aCopy []float64) { // Check the answer. // Construct V.and U ldv := nb v := blas64.General{ Rows: m, Cols: nb, Stride: ldv, Data: make([]float64, m*ldv), } if m >= n { for i := 0; i < m; i++ { for j := 0; j <= min(nb-1, i); j++ { if i == j { v.Data[i*ldv+j] = 1 continue } v.Data[i*ldv+j] = a[i*lda+j] } } } else { for i := 1; i < m; i++ { for j := 0; j <= min(nb-1, i-1); j++ { if i-1 == j { v.Data[i*ldv+j] = 1 continue } v.Data[i*ldv+j] = a[i*lda+j] } } } ldu := n u := blas64.General{ Rows: nb, Cols: n, Stride: ldu, Data: make([]float64, nb*ldu), } if m < n { for i := 0; i < nb; i++ { for j := i; j < n; j++ { if i == j { u.Data[i*ldu+j] = 1 continue } u.Data[i*ldu+j] = a[i*lda+j] } } } else { for i := 0; i < nb; i++ { for j := i + 1; j < n; j++ { if j-1 == i { u.Data[i*ldu+j] = 1 continue } u.Data[i*ldu+j] = a[i*lda+j] } } } // Check the reconstruction Q^T * A * P qMat := blas64.General{ Rows: m, Cols: m, Stride: m, Data: make([]float64, m*m), } hMat := blas64.General{ Rows: m, Cols: m, Stride: m, Data: make([]float64, m*m), } pMat := blas64.General{ Rows: n, Cols: n, Stride: n, Data: make([]float64, n*n), } gMat := blas64.General{ Rows: n, Cols: n, Stride: n, Data: make([]float64, n*n), } // set Q and P to I for i := 0; i < m; i++ { qMat.Data[i*qMat.Stride+i] = 1 } for i := 0; i < n; i++ { pMat.Data[i*pMat.Stride+i] = 1 } for i := 0; i < nb; i++ { qCopy := blas64.General{Rows: qMat.Rows, Cols: qMat.Cols, Stride: qMat.Stride, Data: make([]float64, len(qMat.Data))} copy(qCopy.Data, qMat.Data) pCopy := blas64.General{Rows: pMat.Rows, Cols: pMat.Cols, Stride: pMat.Stride, Data: make([]float64, len(pMat.Data))} copy(pCopy.Data, pMat.Data) // Set g and h to I for i := 0; i < m; i++ { for j := 0; j < m; j++ { if i == j { hMat.Data[i*m+j] = 1 } else { hMat.Data[i*m+j] = 0 } } } for i := 0; i < n; i++ { for j := 0; j < n; j++ { if i == j { gMat.Data[i*n+j] = 1 } else { gMat.Data[i*n+j] = 0 } } } // H -= tauQ[i] * v[i] * v[i]^t vi := blas64.Vector{ Inc: v.Stride, Data: v.Data[i:], } blas64.Ger(-tauQ[i], vi, vi, hMat) // G -= tauP[i] * u[i] * u[i]^T ui := blas64.Vector{ Inc: 1, Data: u.Data[i*u.Stride:], } blas64.Ger(-tauP[i], ui, ui, gMat) // Q = Q * G[1] blas64.Gemm(blas.NoTrans, blas.NoTrans, 1, qCopy, hMat, 0, qMat) // P = P * G[i] blas64.Gemm(blas.NoTrans, blas.NoTrans, 1, pCopy, gMat, 0, pMat) } // Compute Q^T * A * P aMat := blas64.General{ Rows: m, Cols: n, Stride: lda, Data: make([]float64, len(aCopy)), } copy(aMat.Data, aCopy) tmp1 := blas64.General{ Rows: m, Cols: n, Stride: n, Data: make([]float64, m*n), } blas64.Gemm(blas.Trans, blas.NoTrans, 1, qMat, aMat, 0, tmp1) tmp2 := blas64.General{ Rows: m, Cols: n, Stride: n, Data: make([]float64, m*n), } blas64.Gemm(blas.NoTrans, blas.NoTrans, 1, tmp1, pMat, 0, tmp2) // Check that the first nb rows and cols of tm2 are upper bidiagonal // if m >= n, and lower bidiagonal otherwise. correctDiag := true matchD := true matchE := true for i := 0; i < m; i++ { for j := 0; j < n; j++ { if i >= nb && j >= nb { continue } v := tmp2.Data[i*tmp2.Stride+j] if i == j { if math.Abs(d[i]-v) > 1e-12 { matchD = false } continue } if m >= n && i == j-1 { if math.Abs(e[j-1]-v) > 1e-12 { matchE = false } continue } if m < n && i-1 == j { if math.Abs(e[i-1]-v) > 1e-12 { matchE = false } continue } if math.Abs(v) > 1e-12 { correctDiag = false } } } if !correctDiag { t.Errorf("Updated A not bi-diagonal") } if !matchD { fmt.Println("d = ", d) t.Errorf("D Mismatch") } if !matchE { t.Errorf("E mismatch") } } // printRowise prints the matrix with one row per line. This is useful for debugging. // If beyond is true, it prints beyond the final column to lda. If false, only // the columns are printed. func printRowise(a []float64, m, n, lda int, beyond bool) { for i := 0; i < m; i++ { end := n if beyond { end = lda } fmt.Println(a[i*lda : i*lda+end]) } }