// Copyright ©2016 The Gonum Authors. All rights reserved. // Use of this source code is governed by a BSD-style // license that can be found in the LICENSE file. package stat_test import ( "testing" "gonum.org/v1/gonum/floats" "gonum.org/v1/gonum/mat" "gonum.org/v1/gonum/stat" ) func TestCanonicalCorrelations(t *testing.T) { tests: for i, test := range []struct { xdata mat.Matrix ydata mat.Matrix weights []float64 wantCorrs []float64 wantpVecs *mat.Dense wantqVecs *mat.Dense wantphiVs *mat.Dense wantpsiVs *mat.Dense epsilon float64 }{ // Test results verified using R. { // Truncated iris data, Sepal vs Petal measurements. xdata: mat.NewDense(10, 2, []float64{ 5.1, 3.5, 4.9, 3.0, 4.7, 3.2, 4.6, 3.1, 5.0, 3.6, 5.4, 3.9, 4.6, 3.4, 5.0, 3.4, 4.4, 2.9, 4.9, 3.1, }), ydata: mat.NewDense(10, 2, []float64{ 1.4, 0.2, 1.4, 0.2, 1.3, 0.2, 1.5, 0.2, 1.4, 0.2, 1.7, 0.4, 1.4, 0.3, 1.5, 0.2, 1.4, 0.2, 1.5, 0.1, }), wantCorrs: []float64{0.7250624174504773, 0.5547679185730191}, wantpVecs: mat.NewDense(2, 2, []float64{ 0.0765914610875867, 0.9970625597666721, 0.9970625597666721, -0.0765914610875868, }), wantqVecs: mat.NewDense(2, 2, []float64{ 0.3075184850910837, 0.9515421069649439, 0.9515421069649439, -0.3075184850910837, }), wantphiVs: mat.NewDense(2, 2, []float64{ -1.9794877596804641, 5.2016325219025124, 4.5211829944066553, -2.7263663170835697, }), wantpsiVs: mat.NewDense(2, 2, []float64{ -0.0613084818030103, 10.8514169865438941, 12.7209032660734298, -7.6793888180353775, }), epsilon: 1e-12, }, // Test results compared to those results presented in examples by // Koch, Inge. Analysis of multivariate and high-dimensional data. // Vol. 32. Cambridge University Press, 2013. ISBN: 9780521887939 { // ASA Car Exposition Data of Ramos and Donoho (1983) // Displacement, Horsepower, Weight xdata: carData.Slice(0, 392, 0, 3), // Acceleration, MPG ydata: carData.Slice(0, 392, 3, 5), wantCorrs: []float64{0.8782187384352336, 0.6328187219216761}, wantpVecs: mat.NewDense(3, 2, []float64{ 0.3218296374829181, 0.3947540257657075, 0.4162807660635797, 0.7573719053303306, 0.8503740401982725, -0.5201509936144236, }), wantqVecs: mat.NewDense(2, 2, []float64{ -0.5161984172278830, -0.8564690269072364, -0.8564690269072364, 0.5161984172278830, }), wantphiVs: mat.NewDense(3, 2, []float64{ 0.0025033152994308, 0.0047795464118615, 0.0201923608080173, 0.0409150208725958, -0.0000247374128745, -0.0026766435161875, }), wantpsiVs: mat.NewDense(2, 2, []float64{ -0.1666196759760772, -0.3637393866139658, -0.0915512109649727, 0.1077863777929168, }), epsilon: 1e-12, }, // Test results compared to those results presented in examples by // Koch, Inge. Analysis of multivariate and high-dimensional data. // Vol. 32. Cambridge University Press, 2013. ISBN: 9780521887939 { // Boston Housing Data of Harrison and Rubinfeld (1978) // Per capita crime rate by town, // Proportion of non-retail business acres per town, // Nitric oxide concentration (parts per 10 million), // Weighted distances to Boston employment centres, // Index of accessibility to radial highways, // Pupil-teacher ratio by town, Proportion of blacks by town xdata: bostonData.Slice(0, 506, 0, 7), // Average number of rooms per dwelling, // Proportion of owner-occupied units built prior to 1940, // Full-value property-tax rate per $10000, // Median value of owner-occupied homes in $1000s ydata: bostonData.Slice(0, 506, 7, 11), wantCorrs: []float64{0.9451239443886021, 0.6786622733370654, 0.5714338361583764, 0.2009739704710440}, wantpVecs: mat.NewDense(7, 4, []float64{ -0.2574391924541896, -0.015847751662118038, -0.21221699346310258, -0.09457338038947205, -0.48365944300184865, -0.3837101908138455, -0.14744483174159395, 0.6597324886718278, -0.08007763658732961, -0.34935567428092285, -0.3287336458109394, -0.2862040444334662, 0.127758636038638, 0.7337427663667616, -0.4851134819036985, 0.22479648659701942, -0.6969432006136685, 0.43417487760028844, 0.360287288763638, 0.029066160862628414, -0.0990903250057202, -0.05034112154538474, -0.6384330631742202, 0.10223671362182897, 0.42604599637650303, -0.032333435130815824, 0.22895275160308087, 0.6419232947608798, }), wantqVecs: mat.NewDense(4, 4, []float64{ 0.018166050236326788, 0.1583489460479047, 0.006672357764289544, -0.9871935400650647, -0.23476990459861324, -0.9483314614936598, 0.14624205056313114, -0.1554470767919039, -0.9700704038477144, 0.24060717410000537, 0.025183898422704167, 0.020913407435834964, 0.05930006823184807, 0.13304600030976868, 0.9889057151969495, 0.029116149472076858, }), wantphiVs: mat.NewDense(7, 4, []float64{ -0.002746223410819314, -0.009344451350088911, -0.04896439327142919, -0.015496718980582016, -0.042856445527953785, 0.024170870211944927, -0.036072347209397136, 0.18389832305881182, -1.2248435648802678, -5.603092136472504, -5.809414458379886, -4.792681219042103, -0.00436848250946508, 0.34241011649776265, -0.4469961215717922, 0.11501618143536857, -0.07415340695219563, 0.11931357949236807, 0.1115518305471455, 0.002163875832307984, -0.023327032310162924, -0.1046330818178401, -0.38530459750774165, -0.016092787010290065, 0.00012930513878583387, -0.0004540746921447011, 0.0030296315865439264, 0.008189547797465318, }), wantpsiVs: mat.NewDense(4, 4, []float64{ 0.030159336201738367, 0.3002219289647159, -0.08782173775936601, -1.9583226531517122, -0.00654831040738931, -0.03922120867162458, 0.011757077620998818, -0.006111306448187141, -0.0052075523350125505, 0.004577020045295936, 0.0022762313289591976, 0.0008441873006823151, 0.0020111735096325924, -0.0037352799829939247, 0.12925780716217938, 0.10377090563297825, }), epsilon: 1e-12, }, } { var cc stat.CC var corrs []float64 var pVecs, qVecs mat.Dense var phiVs, psiVs mat.Dense for j := 0; j < 2; j++ { err := cc.CanonicalCorrelations(test.xdata, test.ydata, test.weights) if err != nil { t.Errorf("%d use %d: unexpected error: %v", i, j, err) continue tests } corrs = cc.CorrsTo(corrs) cc.LeftTo(&pVecs, true) cc.RightTo(&qVecs, true) cc.LeftTo(&phiVs, false) cc.RightTo(&psiVs, false) if !floats.EqualApprox(corrs, test.wantCorrs, test.epsilon) { t.Errorf("%d use %d: unexpected variance result got:%v, want:%v", i, j, corrs, test.wantCorrs) } if !mat.EqualApprox(&pVecs, test.wantpVecs, test.epsilon) { t.Errorf("%d use %d: unexpected CCA result got:\n%v\nwant:\n%v", i, j, mat.Formatted(&pVecs), mat.Formatted(test.wantpVecs)) } if !mat.EqualApprox(&qVecs, test.wantqVecs, test.epsilon) { t.Errorf("%d use %d: unexpected CCA result got:\n%v\nwant:\n%v", i, j, mat.Formatted(&qVecs), mat.Formatted(test.wantqVecs)) } if !mat.EqualApprox(&phiVs, test.wantphiVs, test.epsilon) { t.Errorf("%d use %d: unexpected CCA result got:\n%v\nwant:\n%v", i, j, mat.Formatted(&phiVs), mat.Formatted(test.wantphiVs)) } if !mat.EqualApprox(&psiVs, test.wantpsiVs, test.epsilon) { t.Errorf("%d use %d: unexpected CCA result got:\n%v\nwant:\n%v", i, j, mat.Formatted(&psiVs), mat.Formatted(test.wantpsiVs)) } } } }